IL_8BTK_313

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCACUC*GGA(OMG)

Length

10 nucleotides

Bulged bases

8BTK|1|A2|G|508

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_313 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.1221

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8BTK|1|A2|C|492
8BTK|1|A2|C|493
8BTK|1|A2|A|494
8BTK|1|A2|C|495
8BTK|1|A2|U|496
8BTK|1|A2|C|497
*
8BTK|1|A2|G|507
8BTK|1|A2|G|508
8BTK|1|A2|A|509
8BTK|1|A2|OMG|510

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ax

40S ribosomal protein S24