IL_8BTK_350

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_350 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.103

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8BTK|1|B5|G|2201
8BTK|1|B5|U|2202
8BTK|1|B5|A|2203
8BTK|1|B5|G|2204
8BTK|1|B5|U|2205
8BTK|1|B5|A2M|2206
8BTK|1|B5|OMG|2207
*
8BTK|1|B5|C|3590
8BTK|1|B5|G|3591
8BTK|1|B5|A|3592
8BTK|1|B5|A|3593
8BTK|1|B5|A|3594
8BTK|1|B5|C|3595

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BP

uL22