IL_8BUU_041
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- 8BUU|1|A|A|1189
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BUU_041 not in the Motif Atlas
- Geometric match to IL_5J7L_280
- Geometric discrepancy: 0.0602
- The information below is about IL_5J7L_280
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.5
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
8BUU|1|A|U|1064
8BUU|1|A|U|1065
8BUU|1|A|A|1066
8BUU|1|A|A|1067
8BUU|1|A|G|1068
8BUU|1|A|U|1069
8BUU|1|A|G|1070
*
8BUU|1|A|C|1186
8BUU|1|A|U|1187
8BUU|1|A|A|1188
8BUU|1|A|A|1189
8BUU|1|A|A|1190
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain J
- 50S ribosomal protein L13
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