IL_8BUU_091

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGGAAA*UGGAG

Length

13 nucleotides

Bulged bases

8BUU|1|A|G|2161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_091 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.2681

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

8BUU|1|A|C|2158
8BUU|1|A|U|2159
8BUU|1|A|U|2160
8BUU|1|A|G|2161
8BUU|1|A|G|2162
8BUU|1|A|A|2163
8BUU|1|A|A|2164
8BUU|1|A|A|2165
*
8BUU|1|A|U|2184
8BUU|1|A|G|2185
8BUU|1|A|G|2186
8BUU|1|A|A|2187
8BUU|1|A|G|2188

Current chains

Chain A

23S rRNA

Nearby chains