IL_8BUU_109
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UG(PSU)AC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 8BUU|1|A|A|2719
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BUU_109 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.07
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8BUU|1|A|U|2716
8BUU|1|A|G|2717
8BUU|1|A|PSU|2718
8BUU|1|A|A|2719
8BUU|1|A|C|2720
*
8BUU|1|A|G|2747
8BUU|1|A|G|2748
8BUU|1|A|U|2749
8BUU|1|A|A|2750
8BUU|1|A|G|2751
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L17
- Chain P
- 50S ribosomal protein L19
Coloring options: