IL_8C00_007

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUAAG*UGAAA

Length

11 nucleotides

Bulged bases

8C00|1|2|U|66, 8C00|1|2|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_007 not in the Motif Atlas

Homologous match to IL_4V88_390

Geometric discrepancy: 0.1397

The information below is about IL_4V88_390

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87517.1

Basepair signature

cWW-L-R-L-R-tHS-L-cWW

Number of instances in this motif group

2

Unit IDs

8C00|1|2|U|64
8C00|1|2|A|65
8C00|1|2|U|66
8C00|1|2|A|67
8C00|1|2|A|68
8C00|1|2|G|69
*
8C00|1|2|U|82
8C00|1|2|G|83
8C00|1|2|A|84
8C00|1|2|A|85
8C00|1|2|A|86

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A