IL_8C00_008

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_008 not in the Motif Atlas

Homologous match to IL_4V88_391

Geometric discrepancy: 0.1166

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8C00|1|2|G|109
8C00|1|2|U|110
8C00|1|2|U|111
8C00|1|2|A|112
*
8C00|1|2|U|302
8C00|1|2|U|303
8C00|1|2|U|304
8C00|1|2|C|305

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A