IL_8C00_011

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

8C00|1|2|U|144, 8C00|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1262

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8C00|1|2|G|142
8C00|1|2|G|143
8C00|1|2|U|144
8C00|1|2|A|145
8C00|1|2|U|146
8C00|1|2|A|147
8C00|1|2|A|148
8C00|1|2|C|149
*
8C00|1|2|G|165
8C00|1|2|C|166
8C00|1|2|U|167
8C00|1|2|A|168
8C00|1|2|A|169
8C00|1|2|U|170
8C00|1|2|A|171
8C00|1|2|C|172

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A