IL_8C00_015

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUAAAAAAUUG*CAU

Length

16 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_015 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.1823

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8C00|1|2|A|213
8C00|1|2|G|214
8C00|1|2|A|215
8C00|1|2|U|216
8C00|1|2|A|217
8C00|1|2|A|218
8C00|1|2|A|219
8C00|1|2|A|220
8C00|1|2|A|221
8C00|1|2|A|222
8C00|1|2|U|241
8C00|1|2|U|242
8C00|1|2|G|243
*
8C00|1|2|C|250
8C00|1|2|A|251
8C00|1|2|U|252

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A