IL_8C00_029

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_029 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.172

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

8C00|1|2|A|550
8C00|1|2|G|551
8C00|1|2|G|552
8C00|1|2|G|553
8C00|1|2|C|554
8C00|1|2|A|555
8C00|1|2|A|556
8C00|1|2|G|557
*
8C00|1|2|C|587
8C00|1|2|U|588

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain g

40S ribosomal protein S30-A