3D structure

PDB id
8C00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAAAAAAUU*AUAUUAGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8C00_038 not in the Motif Atlas
Homologous match to IL_4V88_425
Geometric discrepancy: 0.3177
The information below is about IL_4V88_425
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53064.1
Basepair signature
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

8C00|1|2|G|751
8C00|1|2|A|752
8C00|1|2|A|753
8C00|1|2|A|754
8C00|1|2|A|755
8C00|1|2|A|756
8C00|1|2|A|757
8C00|1|2|U|758
8C00|1|2|U|759
*
8C00|1|2|A|791
8C00|1|2|U|792
8C00|1|2|A|793
8C00|1|2|U|794
8C00|1|2|U|795
8C00|1|2|A|796
8C00|1|2|G|797
8C00|1|2|C|798

Current chains

Chain 2
18S rRNA precursor

Nearby chains

Chain S
40S ribosomal protein S4-A
Chain W
40S ribosomal protein S9-A
Chain X
40S ribosomal protein S11-A
Chain b
40S ribosomal protein S22-A

Coloring options:


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