IL_8C00_039

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

8C00|1|2|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_039 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3945

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8C00|1|2|A|817
8C00|1|2|C|818
8C00|1|2|G|819
8C00|1|2|U|820
8C00|1|2|U|821
8C00|1|2|U|822
*
8C00|1|2|A|850
8C00|1|2|U|851
8C00|1|2|C|852
8C00|1|2|G|853
8C00|1|2|U|854

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain U

40S ribosomal protein S7-A