IL_8C00_051

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_051 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1167

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8C00|1|2|G|1111
8C00|1|2|G|1112
8C00|1|2|A|1113
8C00|1|2|G|1114
8C00|1|2|U|1115
8C00|1|2|A|1116
8C00|1|2|U|1117
8C00|1|2|G|1118
*
8C00|1|2|U|1129
8C00|1|2|G|1130
8C00|1|2|A|1131
8C00|1|2|A|1132
8C00|1|2|A|1133
8C00|1|2|C|1134

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain t

Ribosome biogenesis protein TSR1