IL_8C00_057

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAAGAUUG*CUUGAUU

Length

16 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_057 not in the Motif Atlas

Homologous match to IL_8P9A_470

Geometric discrepancy: 0.4066

The information below is about IL_8P9A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28304.1

Basepair signature

cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8C00|1|2|A|1224
8C00|1|2|U|1225
8C00|1|2|A|1226
8C00|1|2|A|1227
8C00|1|2|G|1229
8C00|1|2|A|1230
8C00|1|2|U|1231
8C00|1|2|U|1232
8C00|1|2|G|1233
*
8C00|1|2|C|1252
8C00|1|2|U|1253
8C00|1|2|U|1254
8C00|1|2|G|1255
8C00|1|2|A|1256
8C00|1|2|U|1258
8C00|1|2|U|1259

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain e

Essential nuclear protein 1