3D structure

PDB id
8C00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CUCA*UUUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8C00_070 not in the Motif Atlas
Geometric match to IL_4V88_473
Geometric discrepancy: 0.103
The information below is about IL_4V88_473
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

8C00|1|2|C|1675
8C00|1|2|U|1676
8C00|1|2|C|1677
8C00|1|2|A|1678
*
8C00|1|2|U|1723
8C00|1|2|U|1724
8C00|1|2|U|1725
8C00|1|2|G|1726

Current chains

Chain 2
18S rRNA precursor

Nearby chains

Chain T
40S ribosomal protein S6-A
Chain V
40S ribosomal protein S8-A

Coloring options:


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