IL_8C01_031

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8C01|1|2|U|578, 8C01|1|2|A|579, 8C01|1|2|U|581, 8C01|1|2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C01_031 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.2743

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8C01|1|2|G|562
8C01|1|2|U|563
8C01|1|2|G|564
8C01|1|2|C|565
8C01|1|2|C|566
8C01|1|2|A|567
8C01|1|2|G|568
*
8C01|1|2|C|575
8C01|1|2|G|576
8C01|1|2|G|577
8C01|1|2|U|578
8C01|1|2|A|579
8C01|1|2|A|580
8C01|1|2|U|581
8C01|1|2|U|582
8C01|1|2|C|583

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain r

Serine/threonine-protein kinase RIO2

Chain t

Ribosome biogenesis protein TSR1