IL_8C3A_105

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGAG*CGCCGGUGAAAUACCAC

Length

22 nucleotides

Bulged bases

8C3A|1|1|U|2465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_58809.1

Basepair signature

cWW-tSS-L-R-L-R-L-R-L-cWW-L-L-R-L-R-L-L-R

Number of instances in this motif group

1

Unit IDs

8C3A|1|1|G|2443
8C3A|1|1|G|2444
8C3A|1|1|G|2445
8C3A|1|1|A|2446
8C3A|1|1|G|2447
*
8C3A|1|1|C|2454
8C3A|1|1|G|2455
8C3A|1|1|C|2456
8C3A|1|1|C|2457
8C3A|1|1|G|2458
8C3A|1|1|G|2459
8C3A|1|1|U|2460
8C3A|1|1|G|2461
8C3A|1|1|A|2462
8C3A|1|1|A|2463
8C3A|1|1|A|2464
8C3A|1|1|U|2465
8C3A|1|1|A|2466
8C3A|1|1|C|2467
8C3A|1|1|C|2468
8C3A|1|1|A|2469
8C3A|1|1|C|2470

Current chains

Chain 1

25S

Nearby chains

Chain l1

Ribosomal protein