IL_8C3A_178

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_178 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.0521

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8C3A|1|AS|G|723
8C3A|1|AS|G|724
8C3A|1|AS|G|725
8C3A|1|AS|G|726
*
8C3A|1|AS|U|737
8C3A|1|AS|G|738
8C3A|1|AS|C|739
8C3A|1|AS|A|740
8C3A|1|AS|C|741

Current chains

Chain AS

25S

Nearby chains

Chain BL

60S ribosomal protein L18-A

Chain BW

60S ribosomal protein L29