IL_8C3A_186

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_186 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.098

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8C3A|1|AS|U|830
8C3A|1|AS|G|831
8C3A|1|AS|A|832
8C3A|1|AS|A|833
8C3A|1|AS|G|834
*
8C3A|1|AS|U|851
8C3A|1|AS|G|852
8C3A|1|AS|G|853
8C3A|1|AS|A|854
8C3A|1|AS|G|855

Current chains

Chain AS

25S

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain BM

60S ribosomal protein L19-A

Chain CK

60S ribosomal protein L43-A