IL_8C3A_199

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUUG*UAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_199 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.2788

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8C3A|1|AS|U|1010
8C3A|1|AS|C|1011
8C3A|1|AS|U|1012
8C3A|1|AS|U|1013
8C3A|1|AS|G|1014
*
8C3A|1|AS|U|1030
8C3A|1|AS|A|1031
8C3A|1|AS|A|1032

Current chains

Chain AS

25S

Nearby chains

Chain AZ

Uncharacterized protein CaJ7.0206

Chain BE

60S ribosomal protein L10

Chain CL

60S ribosomal protein CAALFM_C304810CA