IL_8C3A_220
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8C3A|1|AS|A|1584, 8C3A|1|AS|A|1585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8C3A_220 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.041
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8C3A|1|AS|C|1528
8C3A|1|AS|U|1529
8C3A|1|AS|A|1530
8C3A|1|AS|A|1531
8C3A|1|AS|G|1532
*
8C3A|1|AS|C|1581
8C3A|1|AS|G|1582
8C3A|1|AS|A|1583
8C3A|1|AS|A|1584
8C3A|1|AS|A|1585
8C3A|1|AS|G|1586
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AU
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AW
- 60S ribosomal protein L2-B
- Chain CB
- 60S ribosomal protein L34-B
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
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