IL_8C3A_222

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_222 not in the Motif Atlas

Homologous match to IL_8C3A_069

Geometric discrepancy: 0.2136

The information below is about IL_8C3A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8C3A|1|AS|C|1559
8C3A|1|AS|U|1560
8C3A|1|AS|U|1561
*
8C3A|1|AS|A|1570
8C3A|1|AS|G|1571
8C3A|1|AS|G|1572

Current chains

Chain AS

25S

Nearby chains

Chain AU

5.8S ribosomal RNA; 5.8S rRNA

Chain BS

60S ribosomal protein L25