IL_8C3A_289

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

8C3A|1|AS|G|3334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_289 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.0432

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

8C3A|1|AS|U|3297
8C3A|1|AS|G|3298
8C3A|1|AS|U|3299
8C3A|1|AS|A|3300
8C3A|1|AS|A|3301
8C3A|1|AS|G|3302
*
8C3A|1|AS|C|3332
8C3A|1|AS|U|3333
8C3A|1|AS|G|3334
8C3A|1|AS|A|3335
8C3A|1|AS|G|3336

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BR

60S ribosomal protein L24-A

Chain BY

60S ribosomal protein L31-B