IL_8C3A_326

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

8C3A|1|B|U|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_326 not in the Motif Atlas

Homologous match to IL_8C3A_415

Geometric discrepancy: 0.0807

The information below is about IL_8C3A_415

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8C3A|1|B|U|437
8C3A|1|B|U|438
8C3A|1|B|A|439
*
8C3A|1|B|U|461
8C3A|1|B|A|462

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

Ribosomal protein S4

Chain a

40S ribosomal protein S24