IL_8C3A_343

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAA*UUAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_343 not in the Motif Atlas

Geometric match to IL_5J7L_006

Geometric discrepancy: 0.3784

The information below is about IL_5J7L_006

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8C3A|1|B|G|736
8C3A|1|B|A|737
8C3A|1|B|A|738
*
8C3A|1|B|U|778
8C3A|1|B|U|779
8C3A|1|B|A|780
8C3A|1|B|G|781
8C3A|1|B|C|782

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain N

40S ribosomal protein S11A

Chain Y

40S ribosomal protein S22-A