IL_8C3A_375

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGC*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_375 not in the Motif Atlas

Geometric match to IL_1RPU_001

Geometric discrepancy: 0.2216

The information below is about IL_1RPU_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8C3A|1|B|U|1338
8C3A|1|B|G|1339
8C3A|1|B|C|1340
*
8C3A|1|B|G|1353
8C3A|1|B|U|1354
8C3A|1|B|A|1355

Current chains

Chain B

18S

Nearby chains

Chain S

40S ribosomal protein S16

Chain V

40S ribosomal protein S19-A