IL_8C3A_446

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8C3A|1|CM|G|1096
8C3A|1|CM|G|1097
8C3A|1|CM|A|1098
8C3A|1|CM|G|1099
8C3A|1|CM|U|1100
8C3A|1|CM|A|1101
8C3A|1|CM|U|1102
8C3A|1|CM|G|1103
*
8C3A|1|CM|U|1114
8C3A|1|CM|G|1115
8C3A|1|CM|A|1116
8C3A|1|CM|A|1117
8C3A|1|CM|A|1118
8C3A|1|CM|C|1119

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L41

Chain DK

Ribosomal protein S23 (S12)