Motif IL_41756.2 Version IL_41756.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-5 | 5-11 | 6-10 | 8-9 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_446 | 8C3A | 0.1175 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) | CM | SSU rRNA | G | 1096 | G | 1097 | A | 1098 | G | 1099 | U | 1100 | A | 1101 | U | 1102 | G | 1103 | * | U | 1114 | G | 1115 | A | 1116 | A | 1117 | A | 1118 | C | 1119 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 2 | IL_8P9A_428 | 8P9A | 0.0980 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) | sR | SSU rRNA | G | 1111 | G | 1112 | A | 1113 | G | 1114 | U | 1115 | A | 1116 | U | 1117 | G | 1118 | * | U | 1129 | G | 1130 | A | 1131 | A | 1132 | A | 1133 | C | 1134 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 3 | IL_4LFB_034 | 4LFB | 0.0000 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | A | SSU rRNA | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | * | U | 905 | G | 906 | A | 907 | A | 908 | A | 909 | C | 910 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 4 | IL_5J7L_038 | 5J7L | 0.0945 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | AA | SSU rRNA | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | * | U | 905 | A | 906 | A | 907 | A | 908 | A | 909 | C | 910 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 5 | IL_6CZR_364 | 6CZR | 0.1014 | 0 | 1a | SSU rRNA | G | 865 | G | 866 | A | 867 | G | 868 | U | 869 | A | 870 | C | 871 | G | 872 | * | U | 883 | G | 884 | A | 885 | A | 886 | A | 887 | C | 888 | cWW | tSH | ntHH | ncSH | tWH | ntHS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGUAUG*UGAAAC | 2 |
| GGAGUACG*UGAAAC | 2 |
| GGAGUACG*UAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGUAU*GAAA | 2 |
| GAGUAC*GAAA | 2 |
| GAGUAC*AAAA | 1 |
- Annotations
-
- 8x6 Sarcin-Ricin with inserted Y; G-bulge (2)
- 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) (2)
- (1)
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Heat map statistics
- Min 0.08 | Avg 0.09 | Max 0.15
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