IL_8C3A_467

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAUAAGC*GAAAUC

Length

14 nucleotides

Bulged bases

8C3A|1|CM|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_37172.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8C3A|1|CM|G|1474
8C3A|1|CM|U|1475
8C3A|1|CM|A|1476
8C3A|1|CM|U|1477
8C3A|1|CM|A|1478
8C3A|1|CM|A|1479
8C3A|1|CM|G|1480
8C3A|1|CM|C|1481
*
8C3A|1|CM|G|1500
8C3A|1|CM|A|1501
8C3A|1|CM|A|1502
8C3A|1|CM|A|1503
8C3A|1|CM|U|1504
8C3A|1|CM|C|1505

Current chains

Chain CM

18S

Nearby chains

Chain CQ

Ribosomal protein S3

Chain DH

Ribosomal protein S10

Chain DQ

40S ribosomal protein S29A