IL_8C3A_493

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_493 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.0403

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8C3A|1|AS|G|2795
8C3A|1|AS|G|2796
8C3A|1|AS|C|2797
8C3A|1|AS|U|2798
*
8C3A|1|AS|G|2835
8C3A|1|AS|A|2836
8C3A|1|AS|U|2837
8C3A|1|AS|U|2838
8C3A|1|AS|C|2839

Current chains

Chain AS

25S

Nearby chains

Chain BE

60S ribosomal protein L10

Chain BW

60S ribosomal protein L29