IL_8C83_036

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8C83|1|2|A|579, 8C83|1|2|U|581, 8C83|1|2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C83_036 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1155

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8C83|1|2|G|562
8C83|1|2|U|563
8C83|1|2|G|564
8C83|1|2|C|565
8C83|1|2|C|566
8C83|1|2|A|567
8C83|1|2|G|568
*
8C83|1|2|C|575
8C83|1|2|G|576
8C83|1|2|G|577
8C83|1|2|U|578
8C83|1|2|A|579
8C83|1|2|A|580
8C83|1|2|U|581
8C83|1|2|U|582
8C83|1|2|C|583

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A