IL_8C8X_034

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8X_034 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.2627

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8C8X|1|A|U|1018
8C8X|1|A|U|1019
8C8X|1|A|A|1020
8C8X|1|A|A|1021
8C8X|1|A|G|1022
8C8X|1|A|U|1023
8C8X|1|A|G|1024
*
8C8X|1|A|C|1140
8C8X|1|A|U|1141
8C8X|1|A|A|1142
8C8X|1|A|A|1143
8C8X|1|A|A|1144

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13