IL_8C8Y_064

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_064 not in the Motif Atlas

Homologous match to IL_7A0S_066

Geometric discrepancy: 0.5617

The information below is about IL_7A0S_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8C8Y|1|A|C|1837
8C8Y|1|A|C|1838
8C8Y|1|A|G|1839
8C8Y|1|A|G|1840
*
8C8Y|1|A|C|1902
8C8Y|1|A|G|1903

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2