IL_8C8Y_096

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UAAG*CGUUAUAA

Length

12 nucleotides

Bulged bases

8C8Y|1|A|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_096 not in the Motif Atlas

Geometric match to IL_1U63_003

Geometric discrepancy: 0.3943

The information below is about IL_1U63_003

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_24134.1

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8C8Y|1|A|U|82
8C8Y|1|A|A|83
8C8Y|1|A|A|84
8C8Y|1|A|G|85
*
8C8Y|1|A|C|97
8C8Y|1|A|G|98
8C8Y|1|A|U|99
8C8Y|1|A|U|100
8C8Y|1|A|A|101
8C8Y|1|A|U|102
8C8Y|1|A|A|103
8C8Y|1|A|A|104

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24

Chain Y

50S ribosomal protein L29