IL_8C93_007

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C93_007 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.2279

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

8C93|1|A|G|188
8C93|1|A|G|189
8C93|1|A|A|190
8C93|1|A|A|191
8C93|1|A|C|192
8C93|1|A|U|193
8C93|1|A|G|194
*
8C93|1|A|C|201
8C93|1|A|U|202
8C93|1|A|A|203
8C93|1|A|A|204
8C93|1|A|G|205
8C93|1|A|U|206
8C93|1|A|A|207
8C93|1|A|C|208

Current chains

Chain A

23S rRNA

Nearby chains