IL_8C93_017

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8C93|1|A|G|801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C93_017 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.4885

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8C93|1|A|G|674
8C93|1|A|A|675
8C93|1|A|A|676
8C93|1|A|A|677
8C93|1|A|C|678
*
8C93|1|A|G|799
8C93|1|A|A|800
8C93|1|A|G|801
8C93|1|A|A|802
8C93|1|A|U|803
8C93|1|A|A|804
8C93|1|A|G|805
8C93|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4