IL_8C93_021

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C93_021 not in the Motif Atlas

Homologous match to IL_5J7L_270

Geometric discrepancy: 0.4373

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8C93|1|A|G|856
8C93|1|A|G|857
8C93|1|A|G|858
8C93|1|A|G|859
8C93|1|A|U|860
8C93|1|A|A|861
8C93|1|A|G|862
*
8C93|1|A|C|915
8C93|1|A|G|916
8C93|1|A|A|917
8C93|1|A|A|918
8C93|1|A|U|919
8C93|1|A|A|920
8C93|1|A|C|921

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L30