IL_8C94_062

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8C94|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C94_062 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.2533

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8C94|1|A|C|1208
8C94|1|A|U|1209
8C94|1|A|G|1210
8C94|1|A|C|1211
8C94|1|A|G|1212
8C94|1|A|A|1213
8C94|1|A|A|1214
8C94|1|A|G|1215
*
8C94|1|A|U|1234
8C94|1|A|G|1235
8C94|1|A|G|1236
8C94|1|A|A|1237
8C94|1|A|G|1238

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20