IL_8C95_005

3D structure

PDB id

8C95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.92 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C95_005 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.2573

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8C95|1|A|G|188
8C95|1|A|G|189
8C95|1|A|A|190
8C95|1|A|A|191
8C95|1|A|C|192
8C95|1|A|U|193
8C95|1|A|G|194
*
8C95|1|A|C|201
8C95|1|A|U|202
8C95|1|A|A|203
8C95|1|A|A|204
8C95|1|A|G|205
8C95|1|A|U|206
8C95|1|A|A|207
8C95|1|A|C|208

Current chains

Chain A

23S rRNA

Nearby chains