IL_8C97_034

3D structure

PDB id

8C97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.07 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8C97|1|A|G|2777, 8C97|1|A|G|2780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C97_034 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.3136

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8C97|1|A|C|2636
8C97|1|A|U|2637
8C97|1|A|G|2638
8C97|1|A|A|2639
8C97|1|A|G|2640
*
8C97|1|A|C|2774
8C97|1|A|G|2775
8C97|1|A|A|2776
8C97|1|A|G|2777
8C97|1|A|A|2778
8C97|1|A|U|2779
8C97|1|A|G|2780
8C97|1|A|A|2781
8C97|1|A|G|2782

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3