IL_8C9B_008

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

CCAGUAG*CGAACGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C9B_008 not in the Motif Atlas

Geometric match to IL_4V9F_092

Geometric discrepancy: 0.3024

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8C9B|1|A|C|239
8C9B|1|A|C|240
8C9B|1|A|A|241
8C9B|1|A|G|242
8C9B|1|A|U|243
8C9B|1|A|A|244
8C9B|1|A|G|245
*
8C9B|1|A|C|253
8C9B|1|A|G|254
8C9B|1|A|A|255
8C9B|1|A|A|256
8C9B|1|A|C|257
8C9B|1|A|G|258
8C9B|1|A|G|259

Current chains

Chain A

23S rRNA

Nearby chains