IL_8C9B_025

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C9B_025 not in the Motif Atlas

Homologous match to IL_4WF9_014

Geometric discrepancy: 0.2097

The information below is about IL_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

8C9B|1|A|U|293
8C9B|1|A|A|294
8C9B|1|A|G|295
*
8C9B|1|A|C|343
8C9B|1|A|A|344
8C9B|1|A|A|345
8C9B|1|A|A|346
8C9B|1|A|A|347

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24