IL_8CA7_019

3D structure

PDB id

8CA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Omadacycline and spectinomycin bound to the 30S ribosomal subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CA7_019 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0829

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19954.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8CA7|1|A|C|1303
8CA7|1|A|G|1304
8CA7|1|A|G|1305
8CA7|1|A|A|1306
8CA7|1|A|U|1307
8CA7|1|A|U|1308
*
8CA7|1|A|A|1329
8CA7|1|A|U|1330
8CA7|1|A|G|1331
8CA7|1|A|A|1332
8CA7|1|A|A|1333
8CA7|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13