IL_8CAH_037

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8CAH|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAH_037 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1016

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

8CAH|1|2|G|616
8CAH|1|2|U|617
8CAH|1|2|U|618
8CAH|1|2|A|619
8CAH|1|2|A|620
8CAH|1|2|A|621
8CAH|1|2|A|622
*
8CAH|1|2|U|1104
8CAH|1|2|C|1105

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S26-A