IL_8CAH_052

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8CAH|1|2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAH_052 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.0757

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8CAH|1|2|C|874
8CAH|1|2|G|875
8CAH|1|2|G|876
8CAH|1|2|G|877
8CAH|1|2|G|878
*
8CAH|1|2|C|950
8CAH|1|2|A|951
8CAH|1|2|A|952
8CAH|1|2|G|953

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain Y

40S ribosomal protein S13

Chain e

40S ribosomal protein S26-A