IL_8CAH_101
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8CAH|1|2|C|1274, 8CAH|1|2|U|1432, 8CAH|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CAH_101 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.099
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CAH|1|2|U|1272
8CAH|1|2|G|1273
8CAH|1|2|C|1274
8CAH|1|2|A|1275
8CAH|1|2|U|1276
8CAH|1|2|G|1277
8CAH|1|2|G|1278
*
8CAH|1|2|U|1430
8CAH|1|2|C|1431
8CAH|1|2|U|1432
8CAH|1|2|G|1433
8CAH|1|2|U|1434
8CAH|1|2|G|1435
8CAH|1|2|A|1436
8CAH|1|2|U|1437
8CAH|1|2|G|1438
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain C
- 40S ribosomal protein S10-A
- Chain K
- 40S ribosomal protein S20
- Chain M
- RPS29A isoform 1
- Chain i
- Eukaryotic translation initiation factor 4C
- Chain z
- Eukaryotic translation initiation factor 3 subunit J
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