3D structure

PDB id
8CAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin and Hygromycin B bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.08 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
8CAI|1|A|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CAI_029 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0565
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

8CAI|1|A|U|605
8CAI|1|A|G|606
8CAI|1|A|A|607
8CAI|1|A|A|608
8CAI|1|A|A|609
8CAI|1|A|U|610
8CAI|1|A|C|611
8CAI|1|A|C|612
*
8CAI|1|A|G|628
8CAI|1|A|A|629
8CAI|1|A|A|630
8CAI|1|A|C|631
8CAI|1|A|U|632
8CAI|1|A|G|633

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
Small ribosomal subunit protein uS4
Chain H
Small ribosomal subunit protein uS8
Chain P
30S ribosomal protein S16
Chain Q
Small ribosomal subunit protein uS17

Coloring options:


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