IL_8CAM_018

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8CAM|1|a|G|801, 8CAM|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAM_018 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0477

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8CAM|1|a|G|674
8CAM|1|a|A|675
8CAM|1|a|A|676
8CAM|1|a|A|677
8CAM|1|a|C|678
*
8CAM|1|a|G|799
8CAM|1|a|A|800
8CAM|1|a|G|801
8CAM|1|a|A|802
8CAM|1|a|U|803
8CAM|1|a|A|804
8CAM|1|a|G|805
8CAM|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

50S ribosomal protein L15