IL_8CAM_023

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8CAM|1|a|G|776, 8CAM|1|a|A|788, 8CAM|1|a|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAM_023 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0767

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8CAM|1|a|G|775
8CAM|1|a|G|776
8CAM|1|a|G|777
*
8CAM|1|a|C|787
8CAM|1|a|A|788
8CAM|1|a|A|789
8CAM|1|a|U|790
8CAM|1|a|C|791

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2

Chain r

Large ribosomal subunit protein uL22