3D structure

PDB id
8CAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Evernimicin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.86 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CAM_028 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.0478
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8CAM|1|a|G|856
8CAM|1|a|G|857
8CAM|1|a|G|858
8CAM|1|a|G|859
8CAM|1|a|U|860
8CAM|1|a|A|861
8CAM|1|a|G|862
*
8CAM|1|a|C|915
8CAM|1|a|G|916
8CAM|1|a|A|917
8CAM|1|a|A|918
8CAM|1|a|U|919
8CAM|1|a|A|920
8CAM|1|a|C|921

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain l
Large ribosomal subunit protein uL16
Chain v
Large ribosomal subunit protein bL27
Chain y
Large ribosomal subunit protein uL30

Coloring options:


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